Variant report

Variant	rs11987563
Chromosome Location	chr8:51097289-51097290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11987882	0.90[MKK][hapmap]
rs16914292	0.85[ASW][hapmap]
rs4347005	0.84[YRI][hapmap]
rs4431606	0.86[YRI][hapmap]
rs6991830	0.90[MKK][hapmap];0.83[AMR][1000 genomes]
rs73571393	1.00[ASN][1000 genomes]
rs73573569	0.83[AMR][1000 genomes]
rs73575336	0.81[AFR][1000 genomes]
rs73575356	0.83[AMR][1000 genomes]
rs73575386	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1829361	chr8:51021638-51101126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1027984	chr8:51060895-51098808	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51096200-51097400	Enhancers	NH-A	brain
2	chr8:51096200-51097600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:51096200-51100600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:51096200-51101000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:51096200-51101200	Weak transcription	NHDF-Ad	bronchial
6	chr8:51096600-51098000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:51096600-51098200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:51096600-51100200	Weak transcription	HMEC	breast
9	chr8:51096800-51097800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:51096800-51100800	Weak transcription	Osteobl	bone
11	chr8:51096800-51101000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:51097000-51097400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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