Variant report

Variant	rs11988043
Chromosome Location	chr8:121673699-121673700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10955984	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1143140	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779540	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11780390	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34204857	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34510632	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34522713	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35039173	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35223644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35227301	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6369	chr8:121654665-121699920	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121644800-121674800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr8:121658600-121678600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr8:121662200-121675000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:121662800-121680000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr8:121663000-121681200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:121663600-121685000	Weak transcription	Aorta	Aorta
7	chr8:121665800-121679400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:121667400-121681000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:121667400-121690200	Weak transcription	Fetal Stomach	stomach
10	chr8:121668200-121674800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr8:121668200-121680000	Weak transcription	Gastric	stomach
12	chr8:121668400-121674000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr8:121668600-121678400	Weak transcription	HSMMtube	muscle
14	chr8:121669400-121678400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr8:121669600-121674800	Weak transcription	NHDF-Ad	bronchial
16	chr8:121670000-121674800	Weak transcription	Osteobl	bone
17	chr8:121671200-121674000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr8:121671800-121675000	Strong transcription	HepG2	liver
19	chr8:121672600-121674600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:121672600-121678200	Weak transcription	Primary T cells from cord blood	blood
21	chr8:121672600-121690400	Weak transcription	Fetal Kidney	kidney
22	chr8:121672600-121699600	Weak transcription	HSMM	muscle
23	chr8:121672800-121675800	Weak transcription	Psoas Muscle	Psoas
24	chr8:121673000-121678200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr8:121673200-121673800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr8:121673200-121674000	Strong transcription	Primary B cells from cord blood	blood
27	chr8:121673200-121674400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:121673200-121674600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:121673200-121676600	Weak transcription	Fetal Intestine Small	intestine
30	chr8:121673200-121684800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:121673400-121674400	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr8:121673400-121678000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr8:121673400-121678400	Weak transcription	Liver	Liver

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