Variant report

Variant	rs34522713
Chromosome Location	chr8:121662929-121662930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10955984	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1143140	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11779540	0.82[AMR][1000 genomes]
rs11780390	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988043	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34204857	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34510632	0.82[AMR][1000 genomes]
rs35039173	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35223644	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35227301	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6369	chr8:121654665-121699920	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121613200-121668000	Weak transcription	Pancreas	Pancrea
2	chr8:121628600-121673200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr8:121644200-121666800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:121644800-121664400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:121644800-121664400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:121644800-121674800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr8:121645000-121664400	Weak transcription	NHLF	lung
8	chr8:121645000-121666400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:121645000-121673000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr8:121645200-121665200	Weak transcription	Primary B cells from cord blood	blood
11	chr8:121646400-121666800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr8:121655200-121663200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr8:121655400-121666400	Weak transcription	HSMM	muscle
14	chr8:121655600-121666000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:121655600-121666400	Weak transcription	HSMMtube	muscle
16	chr8:121655800-121664400	Weak transcription	NHDF-Ad	bronchial
17	chr8:121655800-121673000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr8:121658600-121678600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr8:121660800-121666400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr8:121661600-121664200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr8:121661600-121664400	Weak transcription	Psoas Muscle	Psoas
22	chr8:121662200-121668200	Strong transcription	HepG2	liver
23	chr8:121662200-121675000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:121662400-121663000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
25	chr8:121662400-121663000	Enhancers	H9 Cell Line	embryonic stem cell
26	chr8:121662400-121663200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
27	chr8:121662400-121663200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr8:121662400-121663600	Strong transcription	Primary T cells from cord blood	blood
29	chr8:121662400-121663800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
30	chr8:121662400-121668400	Strong transcription	Liver	Liver
31	chr8:121662400-121673400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:121662600-121663800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr8:121662600-121665600	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr8:121662800-121663400	ZNF genes & repeats	Fetal Kidney	kidney
35	chr8:121662800-121680000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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