Variant report

Variant	rs34204857
Chromosome Location	chr8:121647929-121647930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10955984	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1143140	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11779540	0.82[AMR][1000 genomes]
rs11780390	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988043	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34510632	0.82[AMR][1000 genomes]
rs34522713	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35039173	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35223644	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35227301	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121613200-121668000	Weak transcription	Pancreas	Pancrea
2	chr8:121628600-121673200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr8:121633600-121654000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:121638400-121652400	Weak transcription	NHDF-Ad	bronchial
5	chr8:121638400-121653600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:121639400-121649400	Weak transcription	Psoas Muscle	Psoas
7	chr8:121640600-121648000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:121640600-121654000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:121644200-121666800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:121644800-121664400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:121644800-121664400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:121644800-121674800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr8:121645000-121648000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr8:121645000-121649200	Weak transcription	Liver	Liver
15	chr8:121645000-121651200	Weak transcription	Lung	lung
16	chr8:121645000-121653600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr8:121645000-121654600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:121645000-121655200	Weak transcription	HSMM	muscle
19	chr8:121645000-121655200	Weak transcription	HSMMtube	muscle
20	chr8:121645000-121664400	Weak transcription	NHLF	lung
21	chr8:121645000-121666400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:121645000-121673000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr8:121645200-121649200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:121645200-121649600	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr8:121645200-121655000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr8:121645200-121655400	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr8:121645200-121665200	Weak transcription	Primary B cells from cord blood	blood
28	chr8:121645400-121653200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr8:121645400-121653800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr8:121645400-121662400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr8:121645600-121649000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr8:121645600-121649600	Weak transcription	HepG2	liver
33	chr8:121645600-121662400	Weak transcription	Primary T cells from cord blood	blood
34	chr8:121645800-121648000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr8:121646000-121648000	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr8:121646400-121666800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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