Variant report

Variant	rs11988168
Chromosome Location	chr8:66891700-66891701
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10504394	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11996070	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17306842	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17397530	0.93[ASN][1000 genomes]
rs17398569	0.83[AMR][1000 genomes]
rs17398646	0.87[ASN][1000 genomes]
rs59888642	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6472239	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7830215	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66878800-66893600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr8:66886600-66892600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr8:66886600-66893600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:66887200-66893600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr8:66887400-66893400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr8:66887400-66893600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr8:66890600-66896800	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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