Variant report

Variant	rs6472239
Chromosome Location	chr8:66900280-66900281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10504394	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988168	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11996070	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17306842	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397530	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17398569	0.89[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs17398646	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17398736	1.00[JPT][hapmap]
rs59888642	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830215	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66893800-66901800	Weak transcription	Spleen	Spleen
2	chr8:66894800-66904000	Weak transcription	Primary T cells from cord blood	blood
3	chr8:66894800-66904400	Weak transcription	Thymus	Thymus
4	chr8:66895000-66904400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr8:66898200-66900600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr8:66900200-66900600	Enhancers	GM12878-XiMat	blood
7	chr8:66900200-66900800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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