Variant report

Variant	rs59888642
Chromosome Location	chr8:66906419-66906420
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10504394	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988168	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11996070	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17306842	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397530	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17398569	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17398646	0.93[ASN][1000 genomes]
rs6472239	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830215	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66904800-66910000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr8:66905000-66909800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr8:66905000-66910000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr8:66905000-66910000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr8:66905000-66910200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr8:66905000-66910200	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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