Variant report

Variant	rs11989145
Chromosome Location	chr8:92473090-92473091
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10097886	1.00[EUR][1000 genomes]
rs11986042	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs1457052	1.00[CEU][hapmap]
rs16912250	1.00[TSI][hapmap]
rs16912282	0.80[EUR][1000 genomes]
rs16912284	0.80[EUR][1000 genomes]
rs16912443	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs16912684	1.00[CEU][hapmap]
rs16912685	1.00[CEU][hapmap]
rs16912691	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs16912693	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs16912695	1.00[CEU][hapmap]
rs16912719	1.00[CEU][hapmap]
rs16912765	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17364820	1.00[CEU][hapmap]
rs28557054	1.00[EUR][1000 genomes]
rs28692681	1.00[EUR][1000 genomes]
rs4380890	1.00[CEU][hapmap]
rs55881674	0.92[EUR][1000 genomes]
rs55936372	0.96[EUR][1000 genomes]
rs6983587	1.00[CEU][hapmap]
rs6983905	1.00[CEU][hapmap]
rs6988912	1.00[CEU][hapmap]
rs7008245	1.00[CEU][hapmap]
rs7014248	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891190	chr8:92354921-92484872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv523642	chr8:92391870-92542963	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv1018648	chr8:92399692-92527826	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:92473000-92473200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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