Variant report
| Variant | rs6988912 |
|---|---|
| Chromosome Location | chr8:92395855-92395856 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:92395754..92397699-chr8:92401499..92403361,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10097886 | 0.88[EUR][1000 genomes] |
| rs11986042 | 1.00[CEU][hapmap] |
| rs11989145 | 0.88[EUR][1000 genomes] |
| rs16912282 | 0.92[EUR][1000 genomes] |
| rs16912284 | 0.92[EUR][1000 genomes] |
| rs16912443 | 1.00[CEU][hapmap] |
| rs16912684 | 1.00[CEU][hapmap] |
| rs16912685 | 1.00[CEU][hapmap] |
| rs16912691 | 1.00[CEU][hapmap] |
| rs16912693 | 1.00[CEU][hapmap] |
| rs16912695 | 1.00[CEU][hapmap] |
| rs16912719 | 1.00[CEU][hapmap] |
| rs16912765 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17364820 | 1.00[CEU][hapmap] |
| rs28557054 | 0.88[EUR][1000 genomes] |
| rs28692681 | 0.88[EUR][1000 genomes] |
| rs4380890 | 1.00[CEU][hapmap] |
| rs55881674 | 0.88[EUR][1000 genomes] |
| rs55904133 | 0.90[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs55936372 | 0.92[EUR][1000 genomes] |
| rs6983587 | 1.00[CEU][hapmap];0.95[YRI][hapmap] |
| rs6983905 | 1.00[CEU][hapmap];0.95[YRI][hapmap] |
| rs7008245 | 1.00[CEU][hapmap];0.95[YRI][hapmap] |
| rs7014248 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028628 | chr8:91680968-92418954 | Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv539672 | chr8:91680968-92418954 | Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 3 | nsv891190 | chr8:92354921-92484872 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv523642 | chr8:92391870-92542963 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
