Variant report

Variant	rs11989252
Chromosome Location	chr8:59680768-59680769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10091613	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10093666	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1405180	1.00[EUR][1000 genomes]
rs16923851	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28476666	1.00[EUR][1000 genomes]
rs28669082	1.00[EUR][1000 genomes]
rs56932820	1.00[EUR][1000 genomes]
rs58222021	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58754775	0.87[AMR][1000 genomes]
rs60059088	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60260731	1.00[EUR][1000 genomes]
rs7008634	1.00[TSI][hapmap]
rs73684650	1.00[EUR][1000 genomes]
rs7831279	1.00[TSI][hapmap]
rs955104	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59679000-59681000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:59679000-59682200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:59679600-59680800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:59679800-59680800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:59679800-59680800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:59679800-59680800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:59679800-59680800	Flanking Active TSS	Osteobl	bone
8	chr8:59680000-59681200	Enhancers	NHDF-Ad	bronchial
9	chr8:59680400-59681000	Enhancers	Aorta	Aorta
10	chr8:59680600-59680800	Weak transcription	Small Intestine	intestine
11	chr8:59680600-59681000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:59680600-59681600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links