Variant report

Variant	rs28669082
Chromosome Location	chr8:59684914-59684915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10091613	1.00[EUR][1000 genomes]
rs10093666	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11989252	1.00[EUR][1000 genomes]
rs1405180	1.00[EUR][1000 genomes]
rs16923851	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28476666	1.00[EUR][1000 genomes]
rs56932820	1.00[EUR][1000 genomes]
rs58222021	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58754775	0.87[AMR][1000 genomes]
rs60059088	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60260731	1.00[EUR][1000 genomes]
rs73684650	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs955104	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59681400-59685200	Weak transcription	Hela-S3	cervix
2	chr8:59682000-59689000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:59682200-59687200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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