Variant report

Variant	rs1405180
Chromosome Location	chr8:59695191-59695192
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10091613	1.00[EUR][1000 genomes]
rs10093666	1.00[EUR][1000 genomes]
rs11989252	1.00[EUR][1000 genomes]
rs16923851	1.00[EUR][1000 genomes]
rs28476666	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28669082	1.00[EUR][1000 genomes]
rs56932820	1.00[EUR][1000 genomes]
rs58222021	1.00[EUR][1000 genomes]
rs60059088	1.00[EUR][1000 genomes]
rs60260731	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73684650	1.00[EUR][1000 genomes]
rs955104	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59694000-59695800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr8:59694000-59696800	Enhancers	Dnd41	blood
3	chr8:59694000-59697000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr8:59694000-59697400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:59694800-59695600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr8:59694800-59696200	Enhancers	Primary T cells from cord blood	blood
7	chr8:59695000-59696000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr8:59695000-59697000	Enhancers	Primary hematopoietic stem cells	blood
9	chr8:59695000-59697200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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