Variant report

Variant	rs11990352
Chromosome Location	chr8:2140143-2140144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11990262	1.00[EUR][1000 genomes]
rs17064822	0.90[AMR][1000 genomes]
rs17685422	0.90[AMR][1000 genomes]
rs17685428	0.90[AMR][1000 genomes]
rs17752465	0.90[AMR][1000 genomes]
rs17752511	0.80[AMR][1000 genomes]
rs17752654	0.90[AMR][1000 genomes]
rs17752935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57660522	1.00[EUR][1000 genomes]
rs58126128	1.00[EUR][1000 genomes]
rs60549453	1.00[EUR][1000 genomes]
rs61687090	1.00[EUR][1000 genomes]
rs62501422	0.80[AMR][1000 genomes]
rs62501425	0.90[AMR][1000 genomes]
rs62501426	0.90[AMR][1000 genomes]
rs62501429	0.90[AMR][1000 genomes]
rs62501430	0.90[AMR][1000 genomes]
rs62501431	0.90[AMR][1000 genomes]
rs6985236	0.90[AMR][1000 genomes]
rs6994597	0.86[AFR][1000 genomes]
rs73559820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73559825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2137600-2141400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:2138600-2146800	Weak transcription	Fetal Brain Male	brain
3	chr8:2139200-2141200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr8:2139400-2142200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:2139800-2140200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr8:2139800-2140800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr8:2139800-2141600	Enhancers	Dnd41	blood
8	chr8:2139800-2147800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr8:2140000-2141400	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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