Variant report

Variant	rs61687090
Chromosome Location	chr8:2146010-2146011
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11990262	1.00[EUR][1000 genomes]
rs11990352	1.00[EUR][1000 genomes]
rs17752935	1.00[EUR][1000 genomes]
rs57660522	1.00[EUR][1000 genomes]
rs58126128	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60549453	1.00[EUR][1000 genomes]
rs73559820	1.00[EUR][1000 genomes]
rs73559825	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2138600-2146800	Weak transcription	Fetal Brain Male	brain
2	chr8:2139800-2147800	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr8:2141200-2147800	Enhancers	Primary T cells fromperipheralblood	blood
4	chr8:2141800-2147000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:2142000-2147000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:2142800-2146200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:2143000-2148400	Enhancers	Fetal Thymus	thymus
8	chr8:2144000-2150600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr8:2145400-2146600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr8:2145600-2147200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr8:2145800-2146600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr8:2145800-2146800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr8:2145800-2146800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr8:2145800-2147000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr8:2145800-2147000	Enhancers	Thymus	Thymus
16	chr8:2145800-2153400	Enhancers	Primary T cells from cord blood	blood
17	chr8:2146000-2146600	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr8:2146000-2146600	Enhancers	Dnd41	blood
19	chr8:2146000-2147000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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