Variant report

Variant	rs73559825
Chromosome Location	chr8:2142764-2142765
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:2141998..2144504-chr8:2151778..2153917,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11990262	1.00[EUR][1000 genomes]
rs11990352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17064822	0.90[AMR][1000 genomes]
rs17685422	0.90[AMR][1000 genomes]
rs17685428	0.90[AMR][1000 genomes]
rs17752465	0.90[AMR][1000 genomes]
rs17752511	0.80[AMR][1000 genomes]
rs17752654	0.90[AMR][1000 genomes]
rs17752935	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57660522	1.00[EUR][1000 genomes]
rs58126128	1.00[EUR][1000 genomes]
rs60549453	1.00[EUR][1000 genomes]
rs61687090	1.00[EUR][1000 genomes]
rs62501422	0.80[AMR][1000 genomes]
rs62501425	0.90[AMR][1000 genomes]
rs62501426	0.90[AMR][1000 genomes]
rs62501429	0.90[AMR][1000 genomes]
rs62501430	0.90[AMR][1000 genomes]
rs62501431	0.90[AMR][1000 genomes]
rs6985236	0.90[AMR][1000 genomes]
rs73559820	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2138600-2146800	Weak transcription	Fetal Brain Male	brain
2	chr8:2139800-2147800	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr8:2140400-2144600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr8:2141200-2143600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:2141200-2147800	Enhancers	Primary T cells fromperipheralblood	blood
6	chr8:2141400-2143000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr8:2141400-2143200	Enhancers	Fetal Muscle Leg	muscle
8	chr8:2141400-2143600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr8:2141400-2144000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr8:2141400-2144000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr8:2141400-2144600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr8:2141400-2144800	Enhancers	Primary T cells from cord blood	blood
13	chr8:2141600-2143800	Flanking Active TSS	Dnd41	blood
14	chr8:2141600-2144800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr8:2141800-2144000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr8:2141800-2144200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr8:2141800-2145800	Weak transcription	Thymus	Thymus
18	chr8:2141800-2147000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr8:2142000-2147000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:2142200-2143200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr8:2142400-2142800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr8:2142400-2143000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr8:2142600-2142800	Enhancers	Fetal Thymus	thymus

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