Variant report

Variant	rs11991440
Chromosome Location	chr8:62084375-62084376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11985596	0.92[AFR][1000 genomes]
rs11985599	0.92[AFR][1000 genomes]
rs11994709	0.92[AFR][1000 genomes]
rs16926944	0.92[AFR][1000 genomes]
rs16926962	0.92[AFR][1000 genomes]
rs16927143	0.80[AFR][1000 genomes]
rs16927153	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv465698	chr8:62036793-62179465	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611426	chr8:62036793-62179465	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1026243	chr8:62039073-62101123	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv890949	chr8:62073346-62141341	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62063000-62084600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:62080400-62084400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:62082200-62085600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:62083400-62085200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:62084000-62084800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr8:62084000-62084800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr8:62084000-62085000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:62084000-62085000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:62084000-62085400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:62084200-62085000	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links