Variant report

Variant	rs16926944
Chromosome Location	chr8:62062830-62062831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11985596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11985599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11991440	0.92[AFR][1000 genomes]
rs11994709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16927143	0.88[AFR][1000 genomes]
rs16927153	0.88[AFR][1000 genomes]
rs73685725	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv465698	chr8:62036793-62179465	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611426	chr8:62036793-62179465	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1026243	chr8:62039073-62101123	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62059800-62063000	Weak transcription	GM12878-XiMat	blood
2	chr8:62062200-62063600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:62062200-62063800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:62062400-62063000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:62062400-62063000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr8:62062600-62063000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:62062600-62063400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:62062800-62063000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:62062800-62063000	Enhancers	Fetal Brain Female	brain
10	chr8:62062800-62063400	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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