Variant report

Variant	rs16927143
Chromosome Location	chr8:62201229-62201230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11985596	0.88[AFR][1000 genomes]
rs11985599	0.88[AFR][1000 genomes]
rs11991440	0.80[AFR][1000 genomes]
rs11994709	0.88[AFR][1000 genomes]
rs16926944	0.88[AFR][1000 genomes]
rs16926962	0.88[AFR][1000 genomes]
rs16927153	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv831336	chr8:62188396-62364873	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62200200-62201400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr8:62200200-62201400	Active TSS	H1 Cell Line	embryonic stem cell
3	chr8:62200200-62202000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:62200200-62202400	Active TSS	Fetal Brain Male	brain
5	chr8:62200200-62202600	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr8:62200200-62203400	Active TSS	Brain Angular Gyrus	brain
7	chr8:62200200-62203400	Active TSS	Fetal Brain Female	brain
8	chr8:62200400-62201400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:62200400-62201400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:62200400-62201600	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
11	chr8:62200400-62203400	Active TSS	Brain Anterior Caudate	brain
12	chr8:62200600-62201400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr8:62200600-62202000	Active TSS	Brain Cingulate Gyrus	brain
14	chr8:62200800-62201400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr8:62200800-62201400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
16	chr8:62200800-62201400	Enhancers	HMEC	breast
17	chr8:62201000-62201400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
18	chr8:62201000-62201400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
19	chr8:62201000-62201400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:62201000-62201400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:62201000-62201400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr8:62201000-62201400	Enhancers	NHEK	skin
23	chr8:62201000-62201600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
24	chr8:62201200-62201400	Flanking Active TSS	H9 Cell Line	embryonic stem cell
25	chr8:62201200-62201400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
26	chr8:62201200-62201400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
27	chr8:62201200-62201400	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
28	chr8:62201200-62201800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr8:62201200-62201800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr8:62201200-62202600	Active TSS	Brain Hippocampus Middle	brain

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