Variant report

Variant	rs11992003
Chromosome Location	chr8:130058305-130058306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130056568..130058887-chr8:130060600..130062336,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10105449	0.91[AFR][1000 genomes]
rs10435554	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10505531	0.90[EUR][1000 genomes]
rs12541644	0.96[EUR][1000 genomes]
rs12543251	0.96[EUR][1000 genomes]
rs13248403	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16903947	0.90[EUR][1000 genomes]
rs2395867	0.82[EUR][1000 genomes]
rs34871599	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3885943	0.81[AFR][1000 genomes]
rs4333552	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4385435	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4403372	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4551306	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4613963	0.80[AFR][1000 genomes]
rs4636163	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4733538	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4733672	0.90[EUR][1000 genomes]
rs59669561	0.96[EUR][1000 genomes]
rs6470687	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6470692	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6470693	0.81[AFR][1000 genomes]
rs6470694	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66879839	0.87[AFR][1000 genomes]
rs67459926	0.95[AFR][1000 genomes]
rs6989490	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6989798	0.82[AFR][1000 genomes]
rs6994850	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6996806	0.95[EUR][1000 genomes]
rs6998898	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7004935	0.96[EUR][1000 genomes]
rs7013044	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7814844	0.81[AFR][1000 genomes]
rs7832457	0.95[AFR][1000 genomes]
rs7836336	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130055400-130060600	Weak transcription	Dnd41	blood

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