Variant report

Variant	rs6470687
Chromosome Location	chr8:130042119-130042120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10103413	0.81[AFR][1000 genomes]
rs10105449	0.98[AFR][1000 genomes]
rs10435554	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10505531	0.89[EUR][1000 genomes]
rs10808575	0.81[AFR][1000 genomes]
rs11992003	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12541644	0.92[EUR][1000 genomes]
rs12543251	0.92[EUR][1000 genomes]
rs13248403	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16903947	0.89[EUR][1000 genomes]
rs2395867	0.81[EUR][1000 genomes]
rs34871599	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3885943	0.81[AFR][1000 genomes]
rs4333552	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4385435	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4386943	0.83[AFR][1000 genomes]
rs4403372	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4545059	0.81[AFR][1000 genomes]
rs4551306	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4636163	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4733538	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4733672	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59669561	0.92[EUR][1000 genomes]
rs6470684	0.82[AFR][1000 genomes]
rs6470685	0.82[AFR][1000 genomes]
rs6470691	0.81[AFR][1000 genomes]
rs6470692	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6470694	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66879839	0.81[AFR][1000 genomes]
rs67459926	0.88[AFR][1000 genomes]
rs6989490	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6994850	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6996806	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6998898	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7001390	0.82[AFR][1000 genomes]
rs7004935	0.92[EUR][1000 genomes]
rs7008734	0.82[AFR][1000 genomes]
rs7013044	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7814844	0.81[AFR][1000 genomes]
rs7832457	0.88[AFR][1000 genomes]
rs7836336	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7842406	0.81[AFR][1000 genomes]
rs7844734	0.83[AFR][1000 genomes]
rs9297782	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130036400-130051000	Weak transcription	Fetal Thymus	thymus
2	chr8:130040600-130044200	Weak transcription	K562	blood
3	chr8:130041400-130042600	Weak transcription	Right Atrium	heart
4	chr8:130041600-130045400	Weak transcription	Dnd41	blood

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