Variant report

Variant	rs7842406
Chromosome Location	chr8:130062993-130062994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130061308..130064067-chr8:130069803..130071790,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10091534	0.88[EUR][1000 genomes]
rs10092510	0.82[EUR][1000 genomes]
rs10092630	0.87[EUR][1000 genomes]
rs10095301	0.87[EUR][1000 genomes]
rs10099762	0.87[EUR][1000 genomes]
rs10103413	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10105449	0.81[AFR][1000 genomes]
rs10108864	0.87[EUR][1000 genomes]
rs10109509	0.88[EUR][1000 genomes]
rs10110358	0.87[EUR][1000 genomes]
rs10464829	0.90[CEU][hapmap];0.82[TSI][hapmap]
rs10808574	0.84[EUR][1000 genomes]
rs10808575	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10808576	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11781071	0.87[AFR][1000 genomes]
rs11784932	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12548560	0.89[EUR][1000 genomes]
rs13264853	0.88[EUR][1000 genomes]
rs13276597	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1866980	0.85[EUR][1000 genomes]
rs2028515	0.82[EUR][1000 genomes]
rs3885943	0.97[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4266613	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4326354	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4386943	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4391393	0.97[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4487715	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4545059	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4628228	0.87[EUR][1000 genomes]
rs4636163	0.83[AFR][1000 genomes]
rs4733674	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs55830016	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56104205	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56198698	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6470675	0.85[EUR][1000 genomes]
rs6470684	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6470685	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6470687	0.81[AFR][1000 genomes]
rs6470688	0.84[AFR][1000 genomes]
rs6470691	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6470693	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6989798	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6991090	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6995813	0.85[EUR][1000 genomes]
rs6997012	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7001390	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7003680	0.85[EUR][1000 genomes]
rs7008734	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7014288	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7015312	0.88[EUR][1000 genomes]
rs7016655	0.86[EUR][1000 genomes]
rs7017891	0.87[EUR][1000 genomes]
rs7018297	0.87[EUR][1000 genomes]
rs7814844	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7821930	0.89[EUR][1000 genomes]
rs7822165	0.84[EUR][1000 genomes]
rs7827792	0.86[EUR][1000 genomes]
rs7827975	0.86[EUR][1000 genomes]
rs7828005	0.89[EUR][1000 genomes]
rs7833433	0.87[EUR][1000 genomes]
rs7835026	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7836274	0.90[EUR][1000 genomes]
rs7836420	0.83[EUR][1000 genomes]
rs7837430	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841546	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7842220	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7843646	0.86[EUR][1000 genomes]
rs7843900	0.86[EUR][1000 genomes]
rs7844734	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9297780	0.92[EUR][1000 genomes]
rs9297781	0.86[EUR][1000 genomes]
rs9297782	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130060600-130064200	ZNF genes & repeats	Dnd41	blood
2	chr8:130061000-130071000	Weak transcription	Thymus	Thymus
3	chr8:130062200-130071000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:130062400-130071200	Weak transcription	Fetal Thymus	thymus

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