Variant report

Variant	rs7835026
Chromosome Location	chr8:130040065-130040066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYC-12	chr8:130039860-130040272	NONHSAT129105

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10091534	0.83[EUR][1000 genomes]
rs10092510	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10092630	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10095301	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10099762	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10103413	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10108864	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10109509	0.83[EUR][1000 genomes]
rs10110358	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10808574	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10808575	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13264853	0.83[EUR][1000 genomes]
rs13276597	0.81[EUR][1000 genomes]
rs1372445	0.81[AMR][1000 genomes]
rs1372446	0.81[AMR][1000 genomes]
rs1866980	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2028515	0.83[AMR][1000 genomes]
rs3885943	0.82[AFR][1000 genomes]
rs4386943	0.86[AFR][1000 genomes]
rs4391393	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4487715	0.89[EUR][1000 genomes]
rs4545059	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4628228	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4733674	0.82[AFR][1000 genomes]
rs6470675	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6470684	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6470685	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6470691	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6470693	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7001390	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7008734	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7015312	0.82[EUR][1000 genomes]
rs7016655	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7017891	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7018297	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7814844	0.80[AFR][1000 genomes]
rs7822165	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7827792	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7827975	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7833433	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7836274	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7836420	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7837430	0.85[EUR][1000 genomes]
rs7841546	0.81[EUR][1000 genomes]
rs7842220	0.85[EUR][1000 genomes]
rs7842406	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7843646	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7843900	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7844734	0.86[AFR][1000 genomes]
rs9297780	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9297781	0.83[EUR][1000 genomes]
rs9297782	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130036400-130051000	Weak transcription	Fetal Thymus	thymus
2	chr8:130038200-130041600	Strong transcription	Dnd41	blood
3	chr8:130039200-130040800	Enhancers	Psoas Muscle	Psoas

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