Variant report

Variant	rs7837430
Chromosome Location	chr8:130061829-130061830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130061308..130064067-chr8:130069803..130071790,2	MCF-7	breast:
2	chr8:130056568..130058887-chr8:130060600..130062336,2	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10091534	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10092510	0.82[EUR][1000 genomes]
rs10092630	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10095301	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10099762	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10103413	0.92[EUR][1000 genomes]
rs10108864	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10109509	0.88[EUR][1000 genomes]
rs10110358	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10464829	0.90[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10464869	0.90[AFR][1000 genomes]
rs10505532	0.84[AFR][1000 genomes]
rs10505534	0.84[AFR][1000 genomes]
rs10808573	0.84[AFR][1000 genomes]
rs10808574	0.84[EUR][1000 genomes]
rs10808575	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10808576	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956460	0.90[AFR][1000 genomes]
rs10956461	0.90[AFR][1000 genomes]
rs11784932	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12548560	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13264853	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13276597	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13279328	0.85[AFR][1000 genomes]
rs1441987	0.83[AFR][1000 genomes]
rs1866980	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2028515	0.82[EUR][1000 genomes]
rs3885943	0.85[EUR][1000 genomes]
rs4266613	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4326354	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4367496	0.91[AFR][1000 genomes]
rs4386943	0.85[EUR][1000 genomes]
rs4391393	0.95[EUR][1000 genomes]
rs4445189	0.92[AFR][1000 genomes]
rs4487715	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4545059	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4628228	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4733674	0.85[EUR][1000 genomes]
rs55830016	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56104205	0.89[EUR][1000 genomes]
rs56198698	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6470675	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6470683	0.89[AFR][1000 genomes]
rs6470684	0.84[EUR][1000 genomes]
rs6470685	0.93[EUR][1000 genomes]
rs6470691	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6470693	0.95[EUR][1000 genomes]
rs6989798	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6989876	0.90[AFR][1000 genomes]
rs6991090	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6995803	0.90[AFR][1000 genomes]
rs6995813	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6997012	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7001390	0.84[EUR][1000 genomes]
rs7003680	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7008734	0.93[EUR][1000 genomes]
rs7015312	0.97[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7016655	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7017891	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7018297	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7814844	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7821930	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7822165	0.84[EUR][1000 genomes]
rs7827792	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7827975	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7828005	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7833433	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7835026	0.85[EUR][1000 genomes]
rs7836274	0.90[EUR][1000 genomes]
rs7836420	0.83[EUR][1000 genomes]
rs7841546	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7842220	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7842406	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7843646	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7843900	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7844734	0.85[EUR][1000 genomes]
rs9297780	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9297781	0.86[EUR][1000 genomes]
rs9297782	0.85[EUR][1000 genomes]
rs9969663	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130060600-130064200	ZNF genes & repeats	Dnd41	blood
2	chr8:130060800-130062200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:130061000-130071000	Weak transcription	Thymus	Thymus
4	chr8:130061600-130062400	Strong transcription	Fetal Thymus	thymus

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