Variant report

Variant	rs6989798
Chromosome Location	chr8:130088605-130088606
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130088040..130090042-chr8:130091591..130093443,2	MCF-7	breast:
2	chr8:130086112..130089044-chr8:130090593..130093042,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10092510	0.88[EUR][1000 genomes]
rs10101123	0.84[EUR][1000 genomes]
rs10464829	0.95[CEU][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs10464869	0.85[EUR][1000 genomes]
rs10505532	0.82[EUR][1000 genomes]
rs10505533	0.82[EUR][1000 genomes]
rs10505534	0.82[EUR][1000 genomes]
rs10808573	0.82[EUR][1000 genomes]
rs10808574	0.90[EUR][1000 genomes]
rs10808575	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10808576	0.80[AMR][1000 genomes]
rs10956460	0.84[EUR][1000 genomes]
rs10956461	0.85[EUR][1000 genomes]
rs11781071	0.81[EUR][1000 genomes]
rs11784932	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11992003	0.82[AFR][1000 genomes]
rs12548560	0.83[EUR][1000 genomes]
rs13276597	0.89[EUR][1000 genomes]
rs1372454	0.83[EUR][1000 genomes]
rs1441987	0.81[EUR][1000 genomes]
rs34871599	0.89[AFR][1000 genomes]
rs35157858	0.81[EUR][1000 genomes]
rs3885943	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4266613	0.80[AMR][1000 genomes]
rs4326354	0.80[AMR][1000 genomes]
rs4367496	0.84[EUR][1000 genomes]
rs4386943	0.92[EUR][1000 genomes]
rs4391393	0.80[EUR][1000 genomes]
rs4445189	0.85[EUR][1000 genomes]
rs4487715	0.81[EUR][1000 genomes]
rs4545059	0.81[EUR][1000 genomes]
rs4733674	0.92[EUR][1000 genomes]
rs55830016	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56104205	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56198698	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6470683	0.85[EUR][1000 genomes]
rs6470684	0.90[EUR][1000 genomes]
rs6470685	0.80[EUR][1000 genomes]
rs6470688	0.84[EUR][1000 genomes]
rs6470691	0.81[EUR][1000 genomes]
rs6470693	0.80[EUR][1000 genomes]
rs67459926	0.84[AFR][1000 genomes]
rs6989876	0.82[EUR][1000 genomes]
rs6991090	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6995803	0.85[EUR][1000 genomes]
rs6995813	0.92[EUR][1000 genomes]
rs6997012	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7001390	0.90[EUR][1000 genomes]
rs7003680	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7008734	0.80[EUR][1000 genomes]
rs7014288	0.85[AMR][1000 genomes]
rs7814844	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7821930	0.82[EUR][1000 genomes]
rs7828005	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7832457	0.84[AFR][1000 genomes]
rs7837430	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7841546	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7842220	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7842406	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7844734	0.92[EUR][1000 genomes]
rs9297782	0.92[EUR][1000 genomes]
rs9969663	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130082000-130091400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr8:130085400-130089200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:130085600-130115200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:130085800-130089200	Weak transcription	HMEC	breast
5	chr8:130087600-130089200	Weak transcription	Fetal Stomach	stomach
6	chr8:130087800-130089400	Weak transcription	Fetal Lung	lung
7	chr8:130087800-130089400	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:130087800-130089400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:130088400-130089200	Weak transcription	Thymus	Thymus
10	chr8:130088400-130089400	Enhancers	Fetal Kidney	kidney
11	chr8:130088400-130089400	Weak transcription	Ovary	ovary
12	chr8:130088400-130089600	Transcr. at gene 5' and 3'	Dnd41	blood
13	chr8:130088400-130091600	Enhancers	Fetal Thymus	thymus
14	chr8:130088600-130090200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:130088600-130090200	Enhancers	Colon Smooth Muscle	Colon
16	chr8:130088600-130090400	Enhancers	Cortex derived primary cultured neurospheres	brain

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