Variant report

Variant	rs7014288
Chromosome Location	chr8:130054145-130054146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10092510	0.83[EUR][1000 genomes]
rs10103413	0.81[AFR][1000 genomes]
rs10808574	0.85[EUR][1000 genomes]
rs10808575	0.90[AFR][1000 genomes]
rs11781071	0.83[AFR][1000 genomes]
rs3885943	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4386943	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4391393	0.91[AFR][1000 genomes]
rs4445189	0.82[AMR][1000 genomes]
rs4487715	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4545059	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4733674	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56104205	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs56198698	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6470684	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6470685	0.87[AFR][1000 genomes]
rs6470691	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6470693	0.88[AFR][1000 genomes]
rs6989798	0.85[AMR][1000 genomes]
rs6995813	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7001390	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7008734	0.87[AFR][1000 genomes]
rs7814844	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7828005	0.83[EUR][1000 genomes]
rs7842220	0.85[AFR][1000 genomes]
rs7842406	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7844734	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9297782	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130048000-130054600	Weak transcription	Dnd41	blood

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