Variant report

Variant	rs7828005
Chromosome Location	chr8:130060077-130060078
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10092510	0.92[EUR][1000 genomes]
rs10101123	0.88[EUR][1000 genomes]
rs10103413	0.82[EUR][1000 genomes]
rs10109509	0.90[AFR][1000 genomes]
rs10464829	0.88[EUR][1000 genomes]
rs10464869	0.89[EUR][1000 genomes]
rs10505532	0.86[EUR][1000 genomes]
rs10505533	0.86[EUR][1000 genomes]
rs10505534	0.86[EUR][1000 genomes]
rs10808573	0.86[EUR][1000 genomes]
rs10808574	0.94[EUR][1000 genomes]
rs10808575	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10808576	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10956460	0.88[EUR][1000 genomes]
rs10956461	0.89[EUR][1000 genomes]
rs11781071	0.85[EUR][1000 genomes]
rs11784932	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13276597	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1372454	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1441987	0.84[EUR][1000 genomes]
rs35157858	0.84[EUR][1000 genomes]
rs3885943	0.96[EUR][1000 genomes]
rs4266613	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4326354	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4367496	0.88[EUR][1000 genomes]
rs4386943	0.96[EUR][1000 genomes]
rs4391393	0.84[EUR][1000 genomes]
rs4445189	0.89[EUR][1000 genomes]
rs4487715	0.85[EUR][1000 genomes]
rs4545059	0.85[EUR][1000 genomes]
rs4733674	0.96[EUR][1000 genomes]
rs55830016	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56104205	1.00[EUR][1000 genomes]
rs56198698	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470683	0.89[EUR][1000 genomes]
rs6470684	0.94[EUR][1000 genomes]
rs6470685	0.84[EUR][1000 genomes]
rs6470688	0.88[EUR][1000 genomes]
rs6470691	0.85[EUR][1000 genomes]
rs6470693	0.84[EUR][1000 genomes]
rs6989798	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6989876	0.86[EUR][1000 genomes]
rs6991090	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6995803	0.89[EUR][1000 genomes]
rs6995813	0.96[EUR][1000 genomes]
rs6997012	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7001390	0.94[EUR][1000 genomes]
rs7003680	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7008734	0.84[EUR][1000 genomes]
rs7014288	0.83[EUR][1000 genomes]
rs7814844	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7821930	0.81[ASN][1000 genomes]
rs7836274	0.80[EUR][1000 genomes]
rs7837430	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7841546	0.85[EUR][1000 genomes]
rs7842220	0.89[EUR][1000 genomes]
rs7842406	0.89[EUR][1000 genomes]
rs7844734	0.96[EUR][1000 genomes]
rs9297780	0.82[EUR][1000 genomes]
rs9297781	0.86[AFR][1000 genomes]
rs9297782	0.96[EUR][1000 genomes]
rs9969663	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130055400-130060600	Weak transcription	Dnd41	blood
2	chr8:130058800-130060800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:130059000-130061600	Weak transcription	Fetal Thymus	thymus

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