Variant report

Variant	rs9297781
Chromosome Location	chr8:130029366-130029367
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10091534	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10092510	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10092630	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10095301	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10099762	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10101123	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10102305	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10103413	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10108864	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10109509	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10110358	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10110974	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10464829	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10464869	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10481172	0.89[ASN][1000 genomes]
rs10505532	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10505533	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10505534	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10808573	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10808574	0.82[EUR][1000 genomes]
rs10808575	0.86[EUR][1000 genomes]
rs10808576	0.92[EUR][1000 genomes]
rs10956460	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10956461	0.88[EUR][1000 genomes]
rs11776007	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12548560	0.89[EUR][1000 genomes]
rs13264853	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13276597	0.83[EUR][1000 genomes]
rs1372445	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1372446	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1372454	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1441987	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1441990	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1441991	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1866980	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2028514	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2028515	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35157858	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3885943	0.81[EUR][1000 genomes]
rs4266613	0.93[EUR][1000 genomes]
rs4326354	0.93[EUR][1000 genomes]
rs4367496	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4386943	0.81[EUR][1000 genomes]
rs4391393	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4445189	0.88[EUR][1000 genomes]
rs4487715	0.91[EUR][1000 genomes]
rs4545059	0.90[EUR][1000 genomes]
rs4628228	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4733674	0.81[EUR][1000 genomes]
rs6470673	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6470675	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6470683	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6470684	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6470685	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6470688	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470691	0.91[EUR][1000 genomes]
rs6470693	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6989876	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6995803	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6995813	0.81[EUR][1000 genomes]
rs7001390	0.82[EUR][1000 genomes]
rs7003201	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7008734	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7015312	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7016655	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017891	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7018297	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs766811	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7818239	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7821930	0.89[EUR][1000 genomes]
rs7822165	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7827792	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7827975	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7828005	0.86[AFR][1000 genomes]
rs7833433	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7835026	0.83[EUR][1000 genomes]
rs7836274	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7836420	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7837430	0.86[EUR][1000 genomes]
rs7841546	0.83[EUR][1000 genomes]
rs7842220	0.86[EUR][1000 genomes]
rs7842406	0.86[EUR][1000 genomes]
rs7843646	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7843900	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7844734	0.81[EUR][1000 genomes]
rs9297780	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9297782	0.81[EUR][1000 genomes]
rs9969663	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv971606	chr8:130025407-130032870	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130025200-130035800	Weak transcription	Fetal Thymus	thymus
2	chr8:130028200-130031800	Strong transcription	Dnd41	blood

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