Variant report

Variant	rs11994872
Chromosome Location	chr8:111773203-111773204
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:111770515..111773370-chr8:111778420..111781176,2	K562	blood:

Variant related genes	Relation type
ENSG00000253717	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11779888	0.98[EUR][1000 genomes]
rs11786555	0.82[EUR][1000 genomes]
rs11990659	0.88[EUR][1000 genomes]
rs11990689	0.88[EUR][1000 genomes]
rs11994876	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11994892	0.82[EUR][1000 genomes]
rs11994924	0.82[EUR][1000 genomes]
rs16881105	0.82[EUR][1000 genomes]
rs16881260	0.82[EUR][1000 genomes]
rs4607577	0.82[EUR][1000 genomes]
rs58289479	0.82[EUR][1000 genomes]
rs59688001	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6469323	0.82[EUR][1000 genomes]
rs6992712	0.82[EUR][1000 genomes]
rs7009162	0.82[EUR][1000 genomes]
rs73702342	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73702377	0.86[EUR][1000 genomes]
rs7812873	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7832532	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs974684	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027659	chr8:111585843-111875753	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1025390	chr8:111605571-111806020	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539718	chr8:111605571-111806020	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv831423	chr8:111672801-111869818	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891293	chr8:111704563-111822043	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	nsv1031245	chr8:111716585-111875753	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv891294	chr8:111754075-112163801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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