Variant report

Variant	rs58289479
Chromosome Location	chr8:111847425-111847426
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:111846862..111847654-chr8:112265014..112265719,2	MCF-7	breast:

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10094433	0.91[EUR][1000 genomes]
rs10106484	0.91[EUR][1000 genomes]
rs10108172	0.91[EUR][1000 genomes]
rs10108260	0.91[EUR][1000 genomes]
rs10110044	0.91[EUR][1000 genomes]
rs10112633	0.83[EUR][1000 genomes]
rs10113059	0.87[EUR][1000 genomes]
rs10808440	0.91[EUR][1000 genomes]
rs10955554	0.91[EUR][1000 genomes]
rs11779737	0.84[EUR][1000 genomes]
rs11779888	0.84[EUR][1000 genomes]
rs11783887	0.84[EUR][1000 genomes]
rs11786555	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11988126	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11988928	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11990659	0.93[EUR][1000 genomes]
rs11990689	0.93[EUR][1000 genomes]
rs11991405	0.93[EUR][1000 genomes]
rs11994872	0.82[EUR][1000 genomes]
rs11994892	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11994924	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13268040	0.87[EUR][1000 genomes]
rs13270913	0.91[EUR][1000 genomes]
rs13271392	0.91[EUR][1000 genomes]
rs13280135	0.91[EUR][1000 genomes]
rs13280204	0.89[EUR][1000 genomes]
rs13281673	0.91[EUR][1000 genomes]
rs1387409	0.91[EUR][1000 genomes]
rs1489354	0.91[EUR][1000 genomes]
rs1489355	0.91[EUR][1000 genomes]
rs1489366	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1489371	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1546013	0.91[EUR][1000 genomes]
rs16881105	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16881260	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16881262	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16881278	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16881313	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2351322	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4143847	0.91[EUR][1000 genomes]
rs4335112	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4351440	0.91[EUR][1000 genomes]
rs4351444	0.87[EUR][1000 genomes]
rs4398950	0.87[EUR][1000 genomes]
rs4448249	0.91[EUR][1000 genomes]
rs4607577	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4637866	0.91[EUR][1000 genomes]
rs56249027	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57214640	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59688001	0.82[EUR][1000 genomes]
rs6415454	0.87[EUR][1000 genomes]
rs6415455	0.87[EUR][1000 genomes]
rs6469323	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6469326	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6469329	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6469333	0.91[EUR][1000 genomes]
rs6469334	0.91[EUR][1000 genomes]
rs6469335	0.91[EUR][1000 genomes]
rs6469336	0.91[EUR][1000 genomes]
rs6469337	0.87[EUR][1000 genomes]
rs6469338	0.87[EUR][1000 genomes]
rs6469339	0.87[EUR][1000 genomes]
rs6992712	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6996166	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6996467	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7004409	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7004898	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7009162	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73325303	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73325320	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73325322	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73325323	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73325364	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73325366	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73325385	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73700740	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73700745	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73700751	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73700784	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73702342	0.82[EUR][1000 genomes]
rs73702377	0.95[EUR][1000 genomes]
rs7386585	0.91[EUR][1000 genomes]
rs7387318	0.87[EUR][1000 genomes]
rs7387866	0.87[EUR][1000 genomes]
rs7388644	0.91[EUR][1000 genomes]
rs7459880	0.87[EUR][1000 genomes]
rs7460049	0.87[EUR][1000 genomes]
rs7461197	0.87[EUR][1000 genomes]
rs7462681	0.91[EUR][1000 genomes]
rs7462742	0.91[EUR][1000 genomes]
rs7463567	0.84[EUR][1000 genomes]
rs7463637	0.91[EUR][1000 genomes]
rs7463960	0.89[EUR][1000 genomes]
rs7465108	0.91[EUR][1000 genomes]
rs7812873	0.82[EUR][1000 genomes]
rs7819487	0.85[EUR][1000 genomes]
rs7819888	0.87[EUR][1000 genomes]
rs7821277	0.87[EUR][1000 genomes]
rs7826039	0.84[EUR][1000 genomes]
rs7829873	0.87[EUR][1000 genomes]
rs7832532	0.84[EUR][1000 genomes]
rs7845184	0.91[EUR][1000 genomes]
rs9297439	0.91[EUR][1000 genomes]
rs931411	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs931412	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9649932	0.87[EUR][1000 genomes]
rs974684	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027659	chr8:111585843-111875753	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831423	chr8:111672801-111869818	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1031245	chr8:111716585-111875753	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv891294	chr8:111754075-112163801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1032766	chr8:111779352-111995438	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	esv2754849	chr8:111817591-112088992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1033792	chr8:111824536-111906864	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3418448	chr8:111834718-112112905	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111842600-111848200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:111846600-111847600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:111846600-111849400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:111846800-111848800	Enhancers	HSMMtube	muscle
5	chr8:111846800-111849000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:111847000-111848200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:111847000-111848800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:111847000-111849000	Enhancers	NH-A	brain
9	chr8:111847000-111849400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:111847200-111847600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr8:111847200-111847600	Enhancers	Fetal Lung	lung
12	chr8:111847200-111848000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr8:111847200-111848000	Enhancers	NHLF	lung
14	chr8:111847200-111848400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:111847200-111848600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr8:111847200-111848800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:111847200-111848800	Enhancers	HSMM	muscle
18	chr8:111847200-111849200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr8:111847200-111849400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr8:111847400-111848200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr8:111847400-111848400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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