Variant report

Variant	rs10113059
Chromosome Location	chr8:112009679-112009680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10094433	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10106484	0.95[EUR][1000 genomes]
rs10108172	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10108260	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10110044	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10112633	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10808440	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10955554	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11779737	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11783887	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11786555	0.87[EUR][1000 genomes]
rs11988126	0.93[EUR][1000 genomes]
rs11988928	0.89[EUR][1000 genomes]
rs11990659	0.80[EUR][1000 genomes]
rs11990689	0.80[EUR][1000 genomes]
rs11991405	0.93[EUR][1000 genomes]
rs11994892	0.87[EUR][1000 genomes]
rs11994924	0.87[EUR][1000 genomes]
rs13268040	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13270913	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13271392	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13280135	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13280204	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13281673	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1387409	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1489354	0.95[EUR][1000 genomes]
rs1489355	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1489366	0.89[EUR][1000 genomes]
rs1489371	0.89[EUR][1000 genomes]
rs1546013	0.95[EUR][1000 genomes]
rs16881105	0.87[EUR][1000 genomes]
rs16881260	0.87[EUR][1000 genomes]
rs16881262	0.89[EUR][1000 genomes]
rs16881278	0.89[EUR][1000 genomes]
rs16881313	0.89[EUR][1000 genomes]
rs2351322	0.91[EUR][1000 genomes]
rs4143847	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4335112	0.89[EUR][1000 genomes]
rs4351440	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4351444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4398950	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4448249	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4607577	0.87[EUR][1000 genomes]
rs4637866	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56249027	0.89[EUR][1000 genomes]
rs57214640	0.91[EUR][1000 genomes]
rs58289479	0.87[EUR][1000 genomes]
rs6415454	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6415455	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6469323	0.87[EUR][1000 genomes]
rs6469326	0.89[EUR][1000 genomes]
rs6469329	0.89[EUR][1000 genomes]
rs6469333	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6469334	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6469335	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6469336	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6469337	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6469338	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6469339	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6992712	0.87[EUR][1000 genomes]
rs6996166	0.91[EUR][1000 genomes]
rs6996467	0.93[EUR][1000 genomes]
rs7004409	0.89[EUR][1000 genomes]
rs7004898	0.89[EUR][1000 genomes]
rs7009162	0.86[EUR][1000 genomes]
rs73325303	0.89[EUR][1000 genomes]
rs73325320	0.89[EUR][1000 genomes]
rs73325322	0.89[EUR][1000 genomes]
rs73325323	0.89[EUR][1000 genomes]
rs73325364	0.89[EUR][1000 genomes]
rs73325366	0.89[EUR][1000 genomes]
rs73325385	0.91[EUR][1000 genomes]
rs73700740	0.89[EUR][1000 genomes]
rs73700745	0.89[EUR][1000 genomes]
rs73700751	0.89[EUR][1000 genomes]
rs73700784	0.89[EUR][1000 genomes]
rs73702377	0.82[EUR][1000 genomes]
rs7386452	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7386585	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7387318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7387866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7388561	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7388644	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7459880	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7460049	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7461197	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7462681	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7462742	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7463567	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7463637	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7463960	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7465108	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7819487	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7819888	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7821277	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7826039	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7829873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7845184	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9297439	0.95[EUR][1000 genomes]
rs931411	0.91[EUR][1000 genomes]
rs931412	0.91[EUR][1000 genomes]
rs9649932	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs974684	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891294	chr8:111754075-112163801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2754849	chr8:111817591-112088992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv3418448	chr8:111834718-112112905	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv891295	chr8:111852200-112163801	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1028079	chr8:111939568-112098196	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv891296	chr8:111952230-112191432	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv2762764	chr8:111973389-112160284	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv891297	chr8:111987798-112157540	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv611885	chr8:111987798-112163801	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv891298	chr8:111987798-112163801	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv891299	chr8:111987798-112164746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv891300	chr8:111987798-112171822	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv891301	chr8:111987798-112191432	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv891302	chr8:111987798-112238390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:112008400-112009800	Weak transcription	Brain Angular Gyrus	brain
2	chr8:112008800-112009800	Weak transcription	Brain Anterior Caudate	brain
3	chr8:112009400-112010000	Enhancers	Brain Cingulate Gyrus	brain
4	chr8:112009600-112010600	Enhancers	Brain Hippocampus Middle	brain
5	chr8:112009600-112010800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links