Variant report

Variant	rs7388561
Chromosome Location	chr8:111977315-111977316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10094433	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10106484	0.84[EUR][1000 genomes]
rs10108172	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10108260	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10110044	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10112633	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10113059	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10808440	0.84[EUR][1000 genomes]
rs10955554	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11779737	0.87[AMR][1000 genomes]
rs11783887	0.87[AMR][1000 genomes]
rs11988126	0.82[EUR][1000 genomes]
rs11991405	0.82[EUR][1000 genomes]
rs13268040	0.80[EUR][1000 genomes]
rs13270913	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13271392	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13280135	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13280204	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13281673	0.84[EUR][1000 genomes]
rs1387409	0.84[EUR][1000 genomes]
rs1489354	0.84[EUR][1000 genomes]
rs1489355	0.84[EUR][1000 genomes]
rs1546013	0.84[EUR][1000 genomes]
rs2351322	0.80[EUR][1000 genomes]
rs4143847	0.84[EUR][1000 genomes]
rs4351440	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4351444	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4398950	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4448249	0.84[EUR][1000 genomes]
rs4637866	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57214640	0.80[EUR][1000 genomes]
rs6415454	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6415455	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6469333	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6469334	0.84[EUR][1000 genomes]
rs6469335	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6469336	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6469337	0.80[EUR][1000 genomes]
rs6469338	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6469339	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6996166	0.80[EUR][1000 genomes]
rs6996467	0.82[EUR][1000 genomes]
rs7009378	0.81[AFR][1000 genomes]
rs73325385	0.80[EUR][1000 genomes]
rs7386452	0.83[AMR][1000 genomes]
rs7386585	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7387318	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7387866	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7388644	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7459880	0.80[EUR][1000 genomes]
rs7460049	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7461197	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7462681	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7462742	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7463567	0.87[AMR][1000 genomes]
rs7463637	0.84[EUR][1000 genomes]
rs7463960	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7465108	0.84[EUR][1000 genomes]
rs7819487	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7819888	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7821277	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7826039	0.87[AMR][1000 genomes]
rs7829873	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7845184	0.84[EUR][1000 genomes]
rs9297439	0.84[EUR][1000 genomes]
rs931411	0.80[EUR][1000 genomes]
rs931412	0.80[EUR][1000 genomes]
rs9649932	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891294	chr8:111754075-112163801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1032766	chr8:111779352-111995438	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2754849	chr8:111817591-112088992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3418448	chr8:111834718-112112905	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv891295	chr8:111852200-112163801	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1028079	chr8:111939568-112098196	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv891296	chr8:111952230-112191432	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv2762764	chr8:111973389-112160284	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111969200-111979600	Weak transcription	K562	blood

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