Variant report

Variant	rs13268040
Chromosome Location	chr8:111991956-111991957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCNV1-2	chr8:111991098-111995369	XLOC_007182

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10094433	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10106484	0.95[EUR][1000 genomes]
rs10108172	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10108260	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10110044	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10112633	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10113059	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10808440	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10955554	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11779737	0.98[EUR][1000 genomes]
rs11779888	0.80[EUR][1000 genomes]
rs11783887	0.98[EUR][1000 genomes]
rs11786555	0.87[EUR][1000 genomes]
rs11988126	0.93[EUR][1000 genomes]
rs11988928	0.89[EUR][1000 genomes]
rs11990659	0.80[EUR][1000 genomes]
rs11990689	0.80[EUR][1000 genomes]
rs11991405	0.93[EUR][1000 genomes]
rs11994892	0.87[EUR][1000 genomes]
rs11994924	0.87[EUR][1000 genomes]
rs13270913	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13271392	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13280135	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13280204	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13281673	0.95[EUR][1000 genomes]
rs1387409	0.95[EUR][1000 genomes]
rs1489354	0.95[EUR][1000 genomes]
rs1489355	0.95[EUR][1000 genomes]
rs1489366	0.89[EUR][1000 genomes]
rs1489371	0.89[EUR][1000 genomes]
rs1546013	0.95[EUR][1000 genomes]
rs16881105	0.87[EUR][1000 genomes]
rs16881260	0.87[EUR][1000 genomes]
rs16881262	0.89[EUR][1000 genomes]
rs16881278	0.89[EUR][1000 genomes]
rs16881313	0.89[EUR][1000 genomes]
rs2351322	0.91[EUR][1000 genomes]
rs4143847	0.95[EUR][1000 genomes]
rs4335112	0.89[EUR][1000 genomes]
rs4351440	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4351444	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4398950	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4448249	0.95[EUR][1000 genomes]
rs4607577	0.87[EUR][1000 genomes]
rs4637866	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56249027	0.89[EUR][1000 genomes]
rs57214640	0.91[EUR][1000 genomes]
rs58289479	0.87[EUR][1000 genomes]
rs6415454	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6415455	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6469323	0.87[EUR][1000 genomes]
rs6469326	0.89[EUR][1000 genomes]
rs6469329	0.89[EUR][1000 genomes]
rs6469333	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6469334	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6469335	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6469336	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6469337	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6469338	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6469339	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6992712	0.87[EUR][1000 genomes]
rs6996166	0.91[EUR][1000 genomes]
rs6996467	0.93[EUR][1000 genomes]
rs7004409	0.89[EUR][1000 genomes]
rs7004898	0.89[EUR][1000 genomes]
rs7009162	0.86[EUR][1000 genomes]
rs73325303	0.89[EUR][1000 genomes]
rs73325320	0.89[EUR][1000 genomes]
rs73325322	0.89[EUR][1000 genomes]
rs73325323	0.89[EUR][1000 genomes]
rs73325364	0.89[EUR][1000 genomes]
rs73325366	0.89[EUR][1000 genomes]
rs73325385	0.91[EUR][1000 genomes]
rs73700740	0.89[EUR][1000 genomes]
rs73700745	0.89[EUR][1000 genomes]
rs73700751	0.89[EUR][1000 genomes]
rs73700784	0.89[EUR][1000 genomes]
rs73702377	0.82[EUR][1000 genomes]
rs7386452	0.91[EUR][1000 genomes]
rs7386585	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7387318	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7387866	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7388561	0.80[EUR][1000 genomes]
rs7388644	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7459880	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7460049	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7461197	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7462681	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7462742	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7463567	0.98[EUR][1000 genomes]
rs7463637	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7463960	0.93[EUR][1000 genomes]
rs7465108	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7819487	0.89[EUR][1000 genomes]
rs7819888	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7821277	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7826039	0.98[EUR][1000 genomes]
rs7829873	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7832532	0.80[EUR][1000 genomes]
rs7845184	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9297439	0.95[EUR][1000 genomes]
rs931411	0.91[EUR][1000 genomes]
rs931412	0.91[EUR][1000 genomes]
rs9649932	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs974684	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891294	chr8:111754075-112163801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1032766	chr8:111779352-111995438	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2754849	chr8:111817591-112088992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3418448	chr8:111834718-112112905	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv891295	chr8:111852200-112163801	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1028079	chr8:111939568-112098196	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv891296	chr8:111952230-112191432	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv2762764	chr8:111973389-112160284	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv891297	chr8:111987798-112157540	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv611885	chr8:111987798-112163801	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv891298	chr8:111987798-112163801	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv891299	chr8:111987798-112164746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv891300	chr8:111987798-112171822	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv891301	chr8:111987798-112191432	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv891302	chr8:111987798-112238390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	nsv824706	chr8:111987957-111993831	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111989800-111993400	Weak transcription	Brain Hippocampus Middle	brain
2	chr8:111989800-111995000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:111990000-111995200	Weak transcription	Brain Substantia Nigra	brain
4	chr8:111990800-111993400	Weak transcription	Brain Inferior Temporal Lobe	brain

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