Variant report

Variant	rs11996862
Chromosome Location	chr8:126521807-126521808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126519872..126521908-chr8:126523725..126526407,2	K562	blood:
2	chr8:126516241..126518607-chr8:126521578..126523469,2	MCF-7	breast:
3	chr8:126520525..126522060-chr8:126604216..126606404,2	MCF-7	breast:
4	chr8:126515469..126518186-chr8:126519785..126522159,2	MCF-7	breast:
5	chr8:126445851..126449069-chr8:126519424..126522982,4	MCF-7	breast:
6	chr8:126519998..126523591-chr8:126523937..126526687,3	MCF-7	breast:
7	chr8:126520498..126522119-chr8:126613658..126615873,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11985005	0.87[AFR][1000 genomes]
rs16900656	1.00[AMR][1000 genomes]
rs35116772	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7813932	1.00[AMR][1000 genomes]
rs7835809	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126511400-126522000	Weak transcription	Fetal Lung	lung
2	chr8:126511800-126524000	Weak transcription	Brain Hippocampus Middle	brain
3	chr8:126512800-126525000	Weak transcription	Esophagus	oesophagus
4	chr8:126514600-126522000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:126514800-126524200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:126516400-126525000	Weak transcription	Psoas Muscle	Psoas
7	chr8:126517200-126529000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr8:126517600-126528000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:126517800-126522400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:126517800-126522600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr8:126517800-126522800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr8:126517800-126523600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr8:126518000-126522200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr8:126518000-126522400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr8:126518000-126523400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr8:126518000-126534400	Weak transcription	Right Atrium	heart
17	chr8:126518200-126524000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr8:126518400-126524000	Enhancers	GM12878-XiMat	blood
19	chr8:126518400-126524400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr8:126518600-126522200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr8:126518600-126523400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr8:126518600-126528800	Weak transcription	Right Ventricle	heart
23	chr8:126518600-126529400	Enhancers	Primary T cells fromperipheralblood	blood
24	chr8:126518800-126523400	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr8:126518800-126524000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr8:126518800-126524200	Weak transcription	Liver	Liver
27	chr8:126519000-126524800	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr8:126519200-126524800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr8:126519400-126522400	Weak transcription	Spleen	Spleen
30	chr8:126519400-126524400	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr8:126519800-126523000	Weak transcription	Primary B cells from cord blood	blood
32	chr8:126519800-126524200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr8:126519800-126524600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr8:126520400-126522800	Enhancers	HUVEC	blood vessel
35	chr8:126520400-126524600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr8:126520600-126522000	Weak transcription	Fetal Muscle Leg	muscle
37	chr8:126520800-126522800	Enhancers	Lung	lung
38	chr8:126521000-126525000	Weak transcription	Gastric	stomach
39	chr8:126521200-126522000	Enhancers	HepG2	liver
40	chr8:126521200-126522600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr8:126521200-126523200	Weak transcription	Placenta	Placenta
42	chr8:126521200-126524800	Weak transcription	Primary B cells from peripheral blood	blood
43	chr8:126521200-126525000	Enhancers	Adipose Nuclei	Adipose
44	chr8:126521400-126522800	Enhancers	Hela-S3	cervix
45	chr8:126521400-126524000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr8:126521400-126525000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr8:126521600-126522000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr8:126521600-126522600	Enhancers	A549	lung
49	chr8:126521800-126522400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr8:126521800-126526600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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