Variant report

Variant	rs11997938
Chromosome Location	chr8:61046648-61046649
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11992705	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11992804	1.00[ASN][1000 genomes]
rs11993797	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16918817	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16925756	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1965456	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1965457	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs58381151	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59103400	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs62509884	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62509903	0.97[ASN][1000 genomes]
rs62509912	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs62509914	1.00[ASN][1000 genomes]
rs6994120	0.91[ASN][1000 genomes]
rs7822705	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831332	chr8:60985600-61157730	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61043000-61049000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:61043400-61048600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:61043400-61048600	Weak transcription	Brain Germinal Matrix	brain
4	chr8:61044600-61047800	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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