Variant report

Variant	rs62509903
Chromosome Location	chr8:61031293-61031294
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11992705	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11992804	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11993797	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11997938	0.97[ASN][1000 genomes]
rs16918817	0.97[ASN][1000 genomes]
rs16925756	0.97[ASN][1000 genomes]
rs1965456	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1965457	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28536556	0.81[EUR][1000 genomes]
rs58381151	0.99[ASN][1000 genomes]
rs59103400	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62509884	0.97[ASN][1000 genomes]
rs62509912	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62509914	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6994120	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7822705	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831332	chr8:60985600-61157730	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61031200-61032400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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