Variant report
| Variant | rs16918817 |
|---|---|
| Chromosome Location | chr8:61028411-61028412 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:61028055..61029655-chr8:61032518..61035026,2 | K562 | blood: |
(count:2 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RAB2A-1 | chr8:61028358-61028506 | XLOC_006814 |
| 2 | lnc-RAB2A-1 | chr8:61028358-61028507 | NONHSAT126813 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs11992705 | 0.94[ASN][1000 genomes] |
| rs11992804 | 0.94[ASN][1000 genomes] |
| rs11993797 | 0.94[ASN][1000 genomes] |
| rs11997938 | 0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs16925756 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1965456 | 0.96[ASN][1000 genomes] |
| rs1965457 | 0.96[ASN][1000 genomes] |
| rs58381151 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs59103400 | 0.96[ASN][1000 genomes] |
| rs62509884 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62509903 | 0.97[ASN][1000 genomes] |
| rs62509912 | 0.96[ASN][1000 genomes] |
| rs62509914 | 0.94[ASN][1000 genomes] |
| rs6994120 | 0.97[ASN][1000 genomes] |
| rs7822705 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv917756 | chr8:60942299-61862796 | Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 74 gene(s) | inside rSNPs | diseases |
| 2 | nsv831332 | chr8:60985600-61157730 | Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
