Variant report

Variant	rs1200078
Chromosome Location	chr1:169156764-169156765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1200073	1.00[EUR][1000 genomes]
rs1200075	1.00[EUR][1000 genomes]
rs1200080	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1200084	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1200086	1.00[EUR][1000 genomes]
rs1200155	1.00[EUR][1000 genomes]
rs1200162	1.00[EUR][1000 genomes]
rs1200163	1.00[EUR][1000 genomes]
rs1208368	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1208369	1.00[EUR][1000 genomes]
rs1208374	1.00[EUR][1000 genomes]
rs1208376	1.00[EUR][1000 genomes]
rs74125218	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv831858	chr1:169022383-169179068	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169130400-169195200	Weak transcription	Pancreas	Pancrea
2	chr1:169137600-169158000	Weak transcription	Primary T cells from cord blood	blood
3	chr1:169150400-169162600	Weak transcription	Psoas Muscle	Psoas
4	chr1:169155200-169158800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:169155600-169162800	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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