Variant report

Variant	rs1208369
Chromosome Location	chr1:169169940-169169941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1200073	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1200075	1.00[ASW][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1200078	1.00[EUR][1000 genomes]
rs1200080	1.00[EUR][1000 genomes]
rs1200084	1.00[EUR][1000 genomes]
rs1200086	1.00[ASW][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1200155	1.00[EUR][1000 genomes]
rs1200162	0.80[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1200163	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1208368	1.00[EUR][1000 genomes]
rs1208374	1.00[EUR][1000 genomes]
rs1208376	1.00[EUR][1000 genomes]
rs57214726	0.83[AFR][1000 genomes]
rs57722630	0.83[AFR][1000 genomes]
rs57802772	0.83[AFR][1000 genomes]
rs60917555	0.83[AFR][1000 genomes]
rs61239182	0.83[AFR][1000 genomes]
rs74121612	0.83[AFR][1000 genomes]
rs74121613	0.83[AFR][1000 genomes]
rs74121614	0.83[AFR][1000 genomes]
rs74121621	0.83[AFR][1000 genomes]
rs74125218	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv831858	chr1:169022383-169179068	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169130400-169195200	Weak transcription	Pancreas	Pancrea
2	chr1:169163600-169184000	Weak transcription	Ovary	ovary
3	chr1:169167200-169176400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:169167800-169186800	Weak transcription	Primary T cells from cord blood	blood
5	chr1:169168000-169183800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:169169000-169170200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:169169400-169170200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:169169400-169170200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:169169600-169170000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:169169600-169170000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:169169600-169170000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr1:169169600-169170000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr1:169169600-169170200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr1:169169600-169171000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:169169600-169171200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:169169600-169172600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:169169600-169175600	Weak transcription	Brain Anterior Caudate	brain
18	chr1:169169800-169170000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:169169800-169170000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:169169800-169170400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr1:169169800-169171000	Enhancers	NH-A	brain
22	chr1:169169800-169172800	Enhancers	NHEK	skin
23	chr1:169169800-169173200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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