Variant report

Variant	rs1208376
Chromosome Location	chr1:169187111-169187112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1200073	1.00[EUR][1000 genomes]
rs1200075	1.00[EUR][1000 genomes]
rs1200078	1.00[EUR][1000 genomes]
rs1200080	1.00[EUR][1000 genomes]
rs1200084	1.00[EUR][1000 genomes]
rs1200086	1.00[EUR][1000 genomes]
rs1200155	1.00[EUR][1000 genomes]
rs1200162	1.00[EUR][1000 genomes]
rs1200163	1.00[EUR][1000 genomes]
rs1208368	1.00[EUR][1000 genomes]
rs1208369	1.00[EUR][1000 genomes]
rs1208374	1.00[EUR][1000 genomes]
rs74125218	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv429913	chr1:169177019-169296744	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1834321	chr1:169180302-169240975	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1845262	chr1:169180302-169240975	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169130400-169195200	Weak transcription	Pancreas	Pancrea
2	chr1:169172400-169207600	Weak transcription	Esophagus	oesophagus
3	chr1:169172600-169227000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:169173200-169202000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:169176600-169206200	Weak transcription	Aorta	Aorta
6	chr1:169177400-169207400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:169178600-169191400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:169180000-169210000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:169180600-169206200	Weak transcription	Left Ventricle	heart
10	chr1:169182000-169201000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr1:169182800-169192000	Weak transcription	Small Intestine	intestine
12	chr1:169182800-169205400	Weak transcription	Adipose Nuclei	Adipose
13	chr1:169183600-169187200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:169184000-169198800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:169184400-169206200	Weak transcription	Lung	lung
16	chr1:169184600-169189200	Weak transcription	Brain Germinal Matrix	brain
17	chr1:169184600-169200600	Weak transcription	Fetal Stomach	stomach
18	chr1:169184800-169187400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr1:169184800-169207400	Weak transcription	Ovary	ovary
20	chr1:169185000-169200800	Weak transcription	Fetal Intestine Small	intestine
21	chr1:169185800-169194400	Weak transcription	Primary B cells from cord blood	blood
22	chr1:169186000-169187200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr1:169186000-169187400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr1:169186000-169187800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr1:169186600-169187800	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr1:169186600-169187800	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr1:169186800-169187200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr1:169186800-169187200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:169186800-169187600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr1:169186800-169187600	Enhancers	Primary T cells from cord blood	blood
31	chr1:169186800-169187600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr1:169187000-169187600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr1:169187000-169187600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr1:169187000-169187800	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr1:169187000-169187800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr1:169187000-169187800	Enhancers	H9 Cell Line	embryonic stem cell
37	chr1:169187000-169187800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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