Variant report

Variant	rs12000910
Chromosome Location	chr9:73430422-73430423
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13285335	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1890017	0.86[AMR][1000 genomes]
rs41287377	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55951628	0.83[AMR][1000 genomes]
rs57059988	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57886757	0.88[EUR][1000 genomes]
rs73647163	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73647170	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7850725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73411200-73437400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:73411800-73433400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73418200-73444000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:73418200-73447400	Weak transcription	Fetal Kidney	kidney
5	chr9:73427600-73483400	Weak transcription	Aorta	Aorta
6	chr9:73429400-73438400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:73429600-73430600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr9:73429600-73430800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:73429600-73440000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:73429800-73430800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:73430200-73431000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr9:73430200-73432200	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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