Variant report

Variant	rs13285335
Chromosome Location	chr9:73417675-73417676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12000910	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1890017	0.85[AMR][1000 genomes]
rs41287377	0.85[AMR][1000 genomes]
rs55951628	0.81[AMR][1000 genomes]
rs57059988	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73647163	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73647170	0.81[AMR][1000 genomes]
rs7850725	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73396800-73417800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:73407400-73421000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73407400-73421000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:73407400-73427000	Weak transcription	Aorta	Aorta
5	chr9:73411200-73437400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:73411800-73433400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:73415800-73418200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr9:73415800-73418200	Enhancers	Fetal Kidney	kidney
9	chr9:73415800-73418800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr9:73416000-73417800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:73416000-73418200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr9:73416200-73417800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:73416600-73420800	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:73417200-73418000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:73417200-73418400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr9:73417400-73418200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr9:73417400-73418200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr9:73417600-73418200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr9:73417600-73420800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:73417600-73420800	Weak transcription	Adipose Nuclei	Adipose

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