Variant report

Variant	rs73647163
Chromosome Location	chr9:73427597-73427598
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12000910	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13285335	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1890017	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs41287377	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55951628	0.85[AMR][1000 genomes]
rs57059988	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57886757	0.86[EUR][1000 genomes]
rs73647170	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7850725	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73411200-73437400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:73411800-73433400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73418200-73444000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:73418200-73447400	Weak transcription	Fetal Kidney	kidney
5	chr9:73427000-73427600	ZNF genes & repeats	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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