Variant report

Variant	rs12003600
Chromosome Location	chr9:15118439-15118440
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:15117708..15120327-chr9:15124924..15126439,2	MCF-7	breast:
2	chr9:15117245..15119080-chr9:15120315..15121968,2	K562	blood:
3	chr9:15111864..15114810-chr9:15116682..15119632,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10125248	1.00[AMR][1000 genomes]
rs10481555	1.00[AMR][1000 genomes]
rs10810349	1.00[AMR][1000 genomes]
rs12003018	1.00[AMR][1000 genomes]
rs1746334	1.00[AMR][1000 genomes]
rs1746335	1.00[AMR][1000 genomes]
rs1746336	1.00[AMR][1000 genomes]
rs1746337	1.00[AMR][1000 genomes]
rs1780151	1.00[AMR][1000 genomes]
rs2154152	1.00[AMR][1000 genomes]
rs2186026	1.00[AMR][1000 genomes]
rs2761105	1.00[AMR][1000 genomes]
rs2761116	1.00[AMR][1000 genomes]
rs2761118	1.00[AMR][1000 genomes]
rs2761120	1.00[AMR][1000 genomes]
rs2761122	1.00[AMR][1000 genomes]
rs2761123	1.00[AMR][1000 genomes]
rs2761124	1.00[AMR][1000 genomes]
rs2761125	1.00[AMR][1000 genomes]
rs2761126	1.00[AMR][1000 genomes]
rs2800598	1.00[AMR][1000 genomes]
rs2800600	1.00[AMR][1000 genomes]
rs2800601	1.00[AMR][1000 genomes]
rs2800602	1.00[AMR][1000 genomes]
rs2985032	1.00[AMR][1000 genomes]
rs2985033	1.00[AMR][1000 genomes]
rs2985034	1.00[AMR][1000 genomes]
rs2996633	1.00[AMR][1000 genomes]
rs2996634	1.00[AMR][1000 genomes]
rs4323567	1.00[AMR][1000 genomes]
rs4481708	1.00[AMR][1000 genomes]
rs4507866	1.00[AMR][1000 genomes]
rs4526462	1.00[AMR][1000 genomes]
rs4548273	1.00[AMR][1000 genomes]
rs56108794	1.00[AMR][1000 genomes]
rs563302	1.00[AMR][1000 genomes]
rs56920820	1.00[AMR][1000 genomes]
rs57043384	1.00[AMR][1000 genomes]
rs57232665	1.00[AMR][1000 genomes]
rs58206501	1.00[AMR][1000 genomes]
rs59429561	1.00[AMR][1000 genomes]
rs59503078	1.00[AMR][1000 genomes]
rs60302774	1.00[AMR][1000 genomes]
rs61654094	1.00[AMR][1000 genomes]
rs6474896	1.00[AMR][1000 genomes]
rs7018941	1.00[AMR][1000 genomes]
rs7028472	1.00[AMR][1000 genomes]
rs7032041	1.00[AMR][1000 genomes]
rs7032396	1.00[AMR][1000 genomes]
rs7041016	1.00[AMR][1000 genomes]
rs73646014	1.00[AMR][1000 genomes]
rs7853803	1.00[AMR][1000 genomes]
rs9406494	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv892623	chr9:15079847-15127129	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15114600-15121200	Enhancers	Thymus	Thymus
2	chr9:15115000-15124400	Enhancers	Fetal Thymus	thymus
3	chr9:15116000-15120800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:15116400-15120800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:15116400-15121000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:15116600-15120800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:15116600-15121200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:15116600-15121200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr9:15116600-15121600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:15116800-15120800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:15116800-15121200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:15116800-15121200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:15117000-15121200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:15118000-15120000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr9:15118000-15121800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:15118000-15126800	Weak transcription	Fetal Heart	heart
17	chr9:15118200-15121200	Weak transcription	Fetal Stomach	stomach
18	chr9:15118400-15127000	Weak transcription	Fetal Muscle Leg	muscle

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