Variant report

Variant	rs12005851
Chromosome Location	chr9:99052799-99052800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10990258	0.82[AFR][1000 genomes]
rs2066478	1.00[ASN][1000 genomes]
rs2066480	0.93[ASN][1000 genomes]
rs2066484	0.87[ASN][1000 genomes]
rs28623339	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58913267	1.00[ASN][1000 genomes]
rs58939415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61508499	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8190484	0.93[ASN][1000 genomes]
rs8190485	0.93[ASN][1000 genomes]
rs8190486	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8190487	0.98[AFR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8190489	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8190492	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8190496	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190499	1.00[ASN][1000 genomes]
rs8190518	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532433	chr9:98857250-99382944	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99049000-99055600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:99049600-99055600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:99049600-99060000	Weak transcription	Pancreas	Pancrea
4	chr9:99049600-99064400	Weak transcription	Right Ventricle	heart
5	chr9:99052200-99055600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr9:99052200-99056000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:99052400-99053200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:99052400-99055600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:99052400-99067200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:99052600-99053200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:99052600-99054200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:99052600-99055600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:99052600-99056000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links