Variant report

Variant	rs8190496
Chromosome Location	chr9:99061618-99061619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10990258	0.86[ASW][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs12005851	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16910694	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs2066478	1.00[ASN][1000 genomes]
rs2066480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2066484	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs28623339	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58913267	1.00[ASN][1000 genomes]
rs58939415	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61508499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8190480	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs8190484	0.93[ASN][1000 genomes]
rs8190485	0.93[ASN][1000 genomes]
rs8190486	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8190487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8190489	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8190492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8190499	1.00[ASN][1000 genomes]
rs8190518	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532433	chr9:98857250-99382944	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99049600-99064400	Weak transcription	Right Ventricle	heart
2	chr9:99052400-99067200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:99056400-99064400	Weak transcription	NH-A	brain
4	chr9:99056800-99075600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr9:99058800-99061800	Weak transcription	HSMMtube	muscle
6	chr9:99058800-99067600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:99059200-99063200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:99061400-99062600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:99061400-99062600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:99061400-99063200	Enhancers	Hela-S3	cervix
11	chr9:99061400-99063600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr9:99061600-99062400	Enhancers	Placenta Amnion	Placenta Amnion
13	chr9:99061600-99062600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:99061600-99062600	Enhancers	HSMM	muscle
15	chr9:99061600-99062800	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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