Variant report

Variant	rs8190480
Chromosome Location	chr9:99064788-99064789
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16910694	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2066478	1.00[EUR][1000 genomes]
rs2066480	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2066484	0.82[JPT][hapmap];1.00[AMR][1000 genomes]
rs58913267	1.00[EUR][1000 genomes]
rs59615776	1.00[EUR][1000 genomes]
rs8190482	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs8190484	1.00[AMR][1000 genomes]
rs8190485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8190492	1.00[CEU][hapmap]
rs8190496	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs8190499	1.00[EUR][1000 genomes]
rs8190518	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8190529	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532433	chr9:98857250-99382944	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99052400-99067200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:99056800-99075600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:99058800-99067600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:99064000-99064800	Enhancers	HMEC	breast
5	chr9:99064200-99064800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:99064200-99064800	Bivalent Enhancer	NHEK	skin
7	chr9:99064200-99065000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:99064200-99065000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:99064200-99065400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:99064400-99064800	Enhancers	NH-A	brain
11	chr9:99064600-99064800	Enhancers	HepG2	liver
12	chr9:99064600-99067000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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