Variant report

Variant	rs8190529
Chromosome Location	chr9:99030043-99030044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16910690	0.86[AMR][1000 genomes]
rs16910694	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066478	1.00[EUR][1000 genomes]
rs2066480	1.00[EUR][1000 genomes]
rs58913267	1.00[EUR][1000 genomes]
rs59615776	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8190480	1.00[EUR][1000 genomes]
rs8190485	1.00[EUR][1000 genomes]
rs8190499	1.00[EUR][1000 genomes]
rs8190518	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532433	chr9:98857250-99382944	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99009600-99035000	Weak transcription	Liver	Liver
2	chr9:99020200-99035400	Weak transcription	K562	blood
3	chr9:99021600-99031000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:99023800-99035600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:99029400-99035800	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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