Variant report

Variant	rs16910694
Chromosome Location	chr9:99032857-99032858
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16910690	0.86[AMR][1000 genomes]
rs2066478	1.00[EUR][1000 genomes]
rs2066480	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2066484	0.82[JPT][hapmap]
rs58913267	1.00[EUR][1000 genomes]
rs59615776	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8190480	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8190485	1.00[EUR][1000 genomes]
rs8190492	1.00[CEU][hapmap]
rs8190496	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs8190499	1.00[EUR][1000 genomes]
rs8190518	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8190529	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532433	chr9:98857250-99382944	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99009600-99035000	Weak transcription	Liver	Liver
2	chr9:99020200-99035400	Weak transcription	K562	blood
3	chr9:99023800-99035600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:99029400-99035800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr9:99030400-99042200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr9:99030600-99035600	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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