Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12005851	1.00[ASN][1000 genomes]
rs16910694	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2066478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066480	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2066484	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs28623339	0.93[ASN][1000 genomes]
rs57141285	1.00[AMR][1000 genomes]
rs57681145	1.00[AMR][1000 genomes]
rs58913267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58939415	1.00[ASN][1000 genomes]
rs59253962	1.00[AMR][1000 genomes]
rs59615776	1.00[EUR][1000 genomes]
rs61508499	0.93[ASN][1000 genomes]
rs8190480	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8190484	0.93[ASN][1000 genomes]
rs8190485	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8190486	0.93[ASN][1000 genomes]
rs8190487	0.93[ASN][1000 genomes]
rs8190489	0.93[ASN][1000 genomes]
rs8190492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs8190496	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8190499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8190529	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532433	chr9:98857250-99382944	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99046400-99049400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:99047400-99051600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:99049000-99055600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:99049200-99049400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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