Variant report

Variant	rs1200645
Chromosome Location	chr11:104607750-104607751
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1030397	1.00[ASN][1000 genomes]
rs1147026	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1147029	1.00[ASN][1000 genomes]
rs1200654	1.00[ASN][1000 genomes]
rs1863577	1.00[ASN][1000 genomes]
rs1893819	1.00[ASN][1000 genomes]
rs1893821	1.00[ASN][1000 genomes]
rs2555138	1.00[ASN][1000 genomes]
rs2555139	1.00[ASN][1000 genomes]
rs2850822	1.00[ASN][1000 genomes]
rs2850825	1.00[ASN][1000 genomes]
rs520458	1.00[CHB][hapmap]
rs521270	1.00[CHB][hapmap]
rs58022066	0.83[AFR][1000 genomes]
rs890450	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	esv2761706	chr11:104523335-104634024	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050346	chr11:104548749-104664665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3429731	chr11:104607688-104607916	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104605600-104608400	Enhancers	HUVEC	blood vessel
2	chr11:104606800-104607800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr11:104607200-104607800	Enhancers	Dnd41	blood
4	chr11:104607400-104607800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:104607600-104608200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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